.rst .pdf

Job Scheduling

• Getting Started
  • Prerequisites
  • The freeway analogy
  • Login nodes vs. compute nodes
  • Free account vs. High priority access
  • File system
  • The role of the job script
  • Elements of Job Scheduling
  • Hoffman2 Cluster Status
• Interactive jobs
  • Time limit: h_rt
  • Memory limit: h_data
  • Example: running cellranger interactively
  • Example: running Rstudio interactively with graphical interface
• Submitting batch jobs
  • A simple example
  • Common mistakes
  • Quiz
• Job array (or array jobs)
  • Example 1
  • Example 2
  • Exercises
• SMP (symmetric multi-threaded) jobs
  • Exercises
• Multiple-node (or MPI) Jobs
  • Example
• GPU Computing
• High-priority jobs
• Useful tips
  • Use command line to override parameters in the job script
  • Using -l exclusive
  • Using -l arch
• Trouble shooting
  • Windows file
• Examples
  • Python
  • R
  • Julia
  • Running a canned program (cellranger)
  • Matlab
  • Anaconda
  • Singularity

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Getting Started