Running a canned program (cellranger)
#!/bin/bash
#$ -cwd
#$ -l h_rt=8:00:00,h_data=2g
#$ -o Stdout.$JOB_ID
#$ -e Stderr.$JOB_ID
#$ -j n
#$ -m bea
# Use system-wise modules
source /u/local/Modules/default/init/modules.sh
module load cellranger
# Run program
cellranger count --id=normal --transcriptome=$PATH --fastqs=$PATH ....