Hoffman2 Cluster Advanced Topics documentation
Job Scheduling
Getting Started
Interactive jobs
Time limit:
h_rt
Memory limit:
h_data
Example: running cellranger interactively
Example: running Rstudio interactively with graphical interface
Submitting batch jobs
Job array (or array jobs)
Example 1
Example 2
Exercises
SMP (symmetric multi-threaded) jobs
Exercises
Multiple-node (or MPI) Jobs
Example
GPU Computing
High-priority jobs
Useful tips
Use command line to override parameters in the job script
Using
-l
exclusive
Using
-l
arch
Trouble shooting
Windows file
Examples
Python
R
Julia
Running a canned program (cellranger)
Matlab
Anaconda
Singularity
Acces
Secure Shell (ssh) fundamentals
From Microsoft Windows
From MacOS
Linux
Benchmarks
Matlab virtual memory benchmark
MPI: Message Passing Interface
.md
.pdf
MPI: Message Passing Interface
previous
Matlab virtual memory benchmark