Matlab
Method 1: Running a .m file
#!/bin/bash
#$ -cwd
#$ -l h_rt=8:00:00,h_data=4g
#$ -o stdout.$JOB_ID
#$ -e stderr.$JOB_ID
....
# Use system-wise modules
source /u/local/Modules/default/init/modules.sh
module load matlab/2020a
# Run program
fname_in=“/path/of/your/matlab/script.m"
matlab -nodisplay -nodesktop -nosplash -r "run(‘$fname_in’); exit”
Method 2: Compile & Run
It is possible to compile the matlab code into an executable, then run the executable, in a two-step process:
Compile the matlab code using the Matlab compiler,
mccSubmit the executable just like any other executable
Step 1. Compile the .m file
# from the login node
qrsh -l h_rt=1:00:00,h_data=8g
...
# on the compute node
module load matlab/2020a
# generate executable file
$ mcc -m -R -nodisplay,-singleCompThread test -o test_exe
$ chmod a+x test_exe
The compiling step will also generate a shell script file, run_test_exe.sh, that will run the compiled executable.
Step 2. Submit the shell script (run_test_exe.sh)
#!/bin/bash
#$ -cwd
#$ -l h_rt=8:00:00,h_data=4g
#$ -o stdout.$JOB_ID
#$ -e stderr.$JOB_ID
....
source /u/local/Modules/default/init/modules.sh
module load matlab/2020a
# Run program
./run_test_exe.sh $MATLAB_DIR